=== Starting job 2026-10-29T22:31:55.208Z ===
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-rdf
ERR>    00bd6aec5601..ffafd31d580e  main       -> origin/main
OUT> Updating 00bd6aec5601..ffafd31d580e
OUT> Fast-forward
== git pull successful ==
Starting transformation
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> got added    data/01/20/E1/0120E1CFF14150C5958F7E4C772394AD.ttl,data/0D/C4/1F/0DC41F1D44555AD2A355523A3CD91444.ttl,data/27/87/48/2787483091595FD6A3A6D70EE26B3E1E.ttl,data/30/A1/A5/30A1A568ED055E6D931A30F4094E0204.ttl,data/40/10/A8/4010A8F85BCA5C308BFB2275052353D3.ttl,data/55/A1/58/55A1584F3D7A5F90906F59AC43716226.ttl,data/5B/CD/84/5BCD84189B0E57EF8B7C5F4E3C252C36.ttl,data/6F/1E/DE/6F1EDE6A97CA5CB8A2AFEBB298222B07.ttl,data/A0/FA/B6/A0FAB66264D25C028E1C3001380F8AB5.ttl,data/D0/EE/EE/D0EEEE0791F9515499276ADCA7E64CD9.ttl
> got removed  
> got modified data/6D/98/D4/6D98D4944262516899D6B532FED6E713.ttl
- target is single-graph on https://graphdb.lindas.admin.ch/repositories/lindas/statements
- file count: 11
» handling data/01/20/E1/0120E1CFF14150C5958F7E4C772394AD.ttl
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    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
    dc:title "Xenosporidesmium hongheense H. W. Shen & Z. L. Luo 2026, comb. nov." ;
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<http://doi.org/10.3897/mycokeys.142.216747>
    bibo:endPage "316" ;
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    dc:date "2026" ;
    dc:title "Phylogenetic and morphological reassessment of Sporidesmium - related taxa reveals Lignosporidesmium gen. nov. and Xenosporidesmium lignicola sp. nov." ;
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» success
» handling data/0D/C4/1F/0DC41F1D44555AD2A355523A3CD91444.ttl
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    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
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» success
» handling data/30/A1/A5/30A1A568ED055E6D931A30F4094E0204.ttl
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» success
» handling data/40/10/A8/4010A8F85BCA5C308BFB2275052353D3.ttl
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» success
» handling data/55/A1/58/55A1584F3D7A5F90906F59AC43716226.ttl
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» success
» handling data/5B/CD/84/5BCD84189B0E57EF8B7C5F4E3C252C36.ttl
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» success
» handling data/6F/1E/DE/6F1EDE6A97CA5CB8A2AFEBB298222B07.ttl
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» handling data/A0/FA/B6/A0FAB66264D25C028E1C3001380F8AB5.ttl
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    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
    dc:title "Xenosporidesmium yilonghuense H. W. Shen & Z. L. Luo 2026, comb. nov." ;
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    bibo:endPage "316" ;
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    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
    dc:date "2026" ;
    dc:title "Phylogenetic and morphological reassessment of Sporidesmium - related taxa reveals Lignosporidesmium gen. nov. and Xenosporidesmium lignicola sp. nov." ;
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    dc:description "Figure 3. Xenosporidesmium yilonghuense (HKAS 135964). a. Colonies on natural substrate; b, c. Conidiophores, conidiogenous cells and conidia; d – f. Conidia; g. Germinating conidium. Culture on PDA from (h) front and (i) reverse. Scale bars: 15 μm (b – g)." ;
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<http://dx.doi.org/10.3897/mycokeys.142.216747.figure1>
    dc:description "Figure 1. Phylogram generated from maximum likelihood analysis based on combined LSU, ITS, rpb 2, tef 1 - α, and SSU sequences dataset representing Sordariomycetes. 197 strains are included in the combined analyses which comprise 4,244 characters including gaps (860 characters for LSU, 532 characters for ITS, 974 characters for SSU, 874 characters for rpb 2, and 1,004 characters for tef 1 - α). Chlorociboria aeruginosa (AFTOL-ID 151) and Dermea acerina (AFTOL-ID 941) were selected as the outgroup taxa. Phylogenetic trees generated from maximum likelihood and Bayesian inference analyses were similar in overall topologies. Likelihood of the final tree is evaluated and optimized under GAMMA. The best RAxML tree with a final likelihood value of – 125613.051159 is presented. The matrix contained 2935 distinct alignment patterns, with 32.07 % undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.242946, C = 0.259371, G = 0.279369, T = 0.218314; substitution rates AC = 1.223069, AG = 2.916762, AT = 1.297659, CG = 1.174808, CT = 6.365041, GT = 1.000000, α = 0.366237, Tree-Length: 19.688158. Bayesian analyses generated 8,800 trees (average standard deviation of split frequencies: 0.009914) from which 6,600 were sampled after 25 % of the trees were discarded as burn-in. The alignment contained a total of 2,935 unique site patterns. Bootstrap support values with a ML greater than 65 %, and Bayesian posterior probabilities (PP) greater than 0.97 are given above the nodes as MLBS / BYPP. Thickened branches represent nodes with maximum likelihood bootstrap support (MLBS) of 100 % and Bayesian posterior probability (BYPP) values of 1.00. A hyphen (–) indicates values lower than 65 % MLBS or 0.97 PP. Ex-type cultures are indicated by “ T ” following the strain numbers, newly generated sequences are shown in bold blue, and new combinations are highlighted in orange." ;
    fabio:hasRepresentation <https://binary.pensoft.net/fig/1824127> ;
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» success
» handling data/D0/EE/EE/D0EEEE0791F9515499276ADCA7E64CD9.ttl
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» success
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    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
    dc:title "Xenosporidesmium lignicola Y. Wang, H. W. Shen & Z. L. Luo 2026, sp. nov." ;
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    bibo:endPage "316" ;
    bibo:journal "MycoKeys" ;
    bibo:pubDate "2026-10-29" ;
    bibo:startPage "293" ;
    bibo:volume "142" ;
    dc:creator "Shen, Hong-Wei; Hyde, Kevin D.; Wang, Ying; Yang, Lin; Su, Xi-Jun; Li, Yun-Xia; Luo, Zong-Long" ;
    dc:date "2026" ;
    dc:title "Phylogenetic and morphological reassessment of Sporidesmium - related taxa reveals Lignosporidesmium gen. nov. and Xenosporidesmium lignicola sp. nov." ;
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    dc:description "Figure 2. Xenosporidesmium lignicola (HKAS 135961, holotype). a. Colonies on natural substrate; b – d. Conidiophores; e. Conidiophores and developing conidium; f, g. Conidiophores and conidia; h – k. Conidia; l. Germinating conidium. Culture on PDA from (m) front and (n) reverse. Scale bars: 20 μm (b – g); 15 μm (h – l)." ;
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    dc:description "Figure 1. Phylogram generated from maximum likelihood analysis based on combined LSU, ITS, rpb 2, tef 1 - α, and SSU sequences dataset representing Sordariomycetes. 197 strains are included in the combined analyses which comprise 4,244 characters including gaps (860 characters for LSU, 532 characters for ITS, 974 characters for SSU, 874 characters for rpb 2, and 1,004 characters for tef 1 - α). Chlorociboria aeruginosa (AFTOL-ID 151) and Dermea acerina (AFTOL-ID 941) were selected as the outgroup taxa. Phylogenetic trees generated from maximum likelihood and Bayesian inference analyses were similar in overall topologies. Likelihood of the final tree is evaluated and optimized under GAMMA. The best RAxML tree with a final likelihood value of – 125613.051159 is presented. The matrix contained 2935 distinct alignment patterns, with 32.07 % undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.242946, C = 0.259371, G = 0.279369, T = 0.218314; substitution rates AC = 1.223069, AG = 2.916762, AT = 1.297659, CG = 1.174808, CT = 6.365041, GT = 1.000000, α = 0.366237, Tree-Length: 19.688158. Bayesian analyses generated 8,800 trees (average standard deviation of split frequencies: 0.009914) from which 6,600 were sampled after 25 % of the trees were discarded as burn-in. The alignment contained a total of 2,935 unique site patterns. Bootstrap support values with a ML greater than 65 %, and Bayesian posterior probabilities (PP) greater than 0.97 are given above the nodes as MLBS / BYPP. Thickened branches represent nodes with maximum likelihood bootstrap support (MLBS) of 100 % and Bayesian posterior probability (BYPP) values of 1.00. A hyphen (–) indicates values lower than 65 % MLBS or 0.97 PP. Ex-type cultures are indicated by “ T ” following the strain numbers, newly generated sequences are shown in bold blue, and new combinations are highlighted in orange." ;
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    dwc:country "China" ;
    dwc:eventDate "2023-05-01" ;
    dwc:locality "Dulongjiang River" ;
    dwc:recordedBy "Ying Wang" ;
    dwc:stateProvince "Yunnan Province" ;
    dwc:typeStatus "holotype" ;
    dwc:verbatimElevation "1702" ;
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» success
< done
All succeeded
=== Sucessfully completed job 2026-10-29T22:31:55.208Z ===